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protein basic local alignment search tool (blastp) algorithm  (Biotechnology Information)

 
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    Structured Review

    Biotechnology Information protein basic local alignment search tool (blastp) algorithm
    Protein Basic Local Alignment Search Tool (Blastp) Algorithm, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/protein+basic+local+alignment+search+tool+(blastp)+algorithm/basic+local+alignment+search+tool+for+protein+sequences++blastp+/pm36677499-5-15-13
    Average 90 stars, based on 1 article reviews
    protein basic local alignment search tool (blastp) algorithm - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: Identification and expression analysis of heat-shock proteins in wheat infected with powdery mildew and stripe rust.
    Article Snippet: After screening the National Center for Biotechnology Information (NCBI) database with the Protein Basic Local Alignment Search Tool (BLASTP) algorithm for sequence matches (80% identity as the threshold), the HSP proteins were sorted and classified.

    Article Title: Genome Characterization of Bacteriophage KPP-1, a Novel Member in the Subfamily Vequintavirinae , and Use of Its Endolysin for the Lysis of Multidrug-Resistant Klebsiella variicola In Vitro.
    Article Snippet: Among them, 32 ORFs could be functionally annotated using the National Center for Biotechnology Information (NCBI) Protein Basic Local Alignment Search Tool (BLASTp) algorithm while 223 were found to code for hypothetical proteins.

    Article Title: In silico characterization and expression analysis of eight C-type lectins in obscure puffer Takifugu obscurus.
    Article Snippet: C-type lectins (CTLs) are a group of carbohydrate-binding proteins that play crucial roles in innate immune defense against invading pathogens.. CTLs have been extensively studied in lower vertebrates, such as fish, for their roles in eliminating pathogens; however, their homologs in pufferfish are not well known.. In the present study, eight CTLs from obscure puffer Takifugu obscurus (designated as ToCTL3–10 according to the order they were discovered) were obtained.

    Sequencing:

    Article Title: Structural insights and molecular dynamics into the inhibitory mechanism of a Kunitz-type trypsin inhibitor from Tamarindus indica L
    Article Snippet: The new sequencing of the pTTI triptych fragments was performed by signalling and manual interpretation of the spectra, using the FlexAnalysis 3.4 software (Bruker Daltonics, Bremen–Germany). .. The pTTI protein sequence obtained by MS/MS was compared with other sequences present in the protein database of NCBI (National Centre for Biotechnology Information) ( https://www.ncbi.nlm.nih.gov/ ) and PDB (Protein Data Bank proteins) files sing the BLASTp algorithm (Basic Local Alignment Search Tool–protein) ( https://blast.ncbi.nlm.nih.gov/Blast.cgi ), with multiple alignments of protein sequences on the Clustal Omega server ( https://www.ebi.ac.uk/Tools/msa/clustalo/ ). ..

    Article Title: Recognition and Chaperoning by Pex19, Followed by Trafficking and Membrane Insertion of the Peroxisome Proliferation Protein, Pex11
    Article Snippet: All images were acquired and processed using the AxioVision software (Carl Zeiss), version 4.8.2. .. A sequence similarity search for the Pex11 protein was performed as a Standard Protein BLAST analysis on a dataset of the nonredundant (nr) protein sequences, using the default parameter and the algorithm blastp (protein-protein BLAST) at the National Center for Biotechnology Information ( http://www.ncbi.nlm.nih.gov/BLAST/ , accessed on 1 February 2019). .. The organism names, abbreviations, and GenBank accession numbers of Pex11 homologs are the following: Pp— Pichia pastoris , CAY69135; Hp— Hansenula polymorpha , DQ645582; Sc— Saccharomyces cerevisiae, CAA99168; Ca— Candida albicans , EAK92906; and Yl— Yarrowia lipolytica , CAG81724.

    Article Title: Pex3 and Atg37 compete to regulate the interaction between the pexophagy receptor, Atg30, and the Hrr25 kinase
    Article Snippet: All images were acquired and processed using the AxioVision software (Carl Zeiss), version 4.8.2. .. A sequence similarity search for the Atg30 protein was performed as a Standard Protein BLAST analysis on a dataset of the nonredundant (nr) protein sequences, using the default parameter and the algorithm blastp (protein-protein BLAST) at the National Center for Biotechnology Information ( http://www.ncbi.nlm.nih.gov/BLAST/ ). ..

    Article Title: Recognition and Chaperoning by Pex19, Followed by Trafficking and Membrane Insertion of the Peroxisome Proliferation Protein, Pex11.
    Article Snippet: All images were acquired and processed using the AxioVision software (Carl Zeiss), version 4.8.2. .. A sequence similarity search for the Pex11 protein was performed as a Standard Protein BLAST analysis on a dataset of the nonredundant (nr) protein sequences, using the default parameter and the algorithm blastp (protein-protein BLAST) at the National Center for Biotechnology Information (http://www.ncbi.nlm.nih.gov/BLAST/, accessed on 1 February 2019). .. The organism names, abbreviations, and GenBank accession numbers of Pex11 homologs are the following: Pp—Pichia pastoris, CAY69135; Hp—Hansenula polymorpha, DQ645582; Sc—Saccharomyces cerevisiae, CAA99168; Ca—Candida albicans, EAK92906; and Yl—Yarrowia lipolytica, CAG81724.

    Tandem Mass Spectroscopy:

    Article Title: Structural insights and molecular dynamics into the inhibitory mechanism of a Kunitz-type trypsin inhibitor from Tamarindus indica L
    Article Snippet: The new sequencing of the pTTI triptych fragments was performed by signalling and manual interpretation of the spectra, using the FlexAnalysis 3.4 software (Bruker Daltonics, Bremen–Germany). .. The pTTI protein sequence obtained by MS/MS was compared with other sequences present in the protein database of NCBI (National Centre for Biotechnology Information) ( https://www.ncbi.nlm.nih.gov/ ) and PDB (Protein Data Bank proteins) files sing the BLASTp algorithm (Basic Local Alignment Search Tool–protein) ( https://blast.ncbi.nlm.nih.gov/Blast.cgi ), with multiple alignments of protein sequences on the Clustal Omega server ( https://www.ebi.ac.uk/Tools/msa/clustalo/ ). ..



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